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Št. zadetkov: 4
White paper: standards for handling and analyzing plant pan-genomes
Marc C. Heuermann, Pedro M. Barros, Sebastian Beier, Tim Godec, Kristina Gruden, Nadja Francesca Nolte, Marko Petek, Maja Zagorščak
Pregledni znanstveni članek
Oznake: rastlinski pangenom;standardizacija;kontrola kvalitete;ontologije;metapodatki;plant pan-genome;white paper;standards;quality control;
Plant pan-genomes, which aggregate genomic sequences and annotations from multiple individuals of a species, have emerged as transformative tools for understanding genetic diversity, adaptation, and evolutionary dynamics. Super-pan-genomes, extending across species boundaries, further enable compara ...
Leto: 2025 Vir: Nacionalni inštitut za biologijo (NIB)
Haplotype-resolved genome assembly of the tetraploid potato cultivar Désirée
Tim Godec, Sebastian Beier, Natalia Yaneth Rodriguez-Granados, Rashmi Sasidharan, Lamis Abdelhakim, Markus Teige, Björn Usadel, Kristina Gruden, Marko Petek
Izvirni znanstveni članek
Oznake: cultivar Désirée;potato;functional genomics;genome assembly;annotation pipeline;DNA methylation;epigenetics;
Cultivar Désirée is an important model for potato functional genomics studies to assist breeding strategies. Here, we present a haplotype-resolved genome assembly of Désirée, achieved by assembling PacBio HiFi reads and Hi-C scaffolding, resulting in a high-contiguity chromosome-level assembly. We i ...
Leto: 2025 Vir: Nacionalni inštitut za biologijo (NIB)
Report: Workshop on connecting Knowledge Graphs with BioChatter
Cyril Pommier, Sebastian Beier, Pedro M. Barros, Johann Confais, Nicolas Francillonne, Hugo Rodrigues, Hiromi Kajiya-Kanegae, Ryokei Tanaka, Bruno Costa, Carissa Bleker
Druge monografije in druga zaključena dela
Oznake: grafi znanja;umetna inteligenca;znanost o rastlinah;knowledge graphs;artificial intelligence;plant science;
Report: Workshop on connecting Knowledge Graphs with BioChatter
Leto: 2025 Vir: Nacionalni inštitut za biologijo (NIB)
ELIXIR plant sciences community roadmap 2024-2029
Sebastian Beier, Kristina Gruden, Cyril Pommier, Stéphanie Sidibe-Bocs, Sarah Dyer, Pedro M. Barros, Keywan Hassani-Pak, Bruno Contreras-Moreira, Carissa Bleker
Strokovni članek
Oznake: sistemska biologija;genotipizacija;rastlina;system biology;genotyping;plant;
The ELIXIR Plant Sciences Community is an interdisciplinary group of researchers with diverse backgrounds from computer science to different fields of plant biology. We answer the needs of both bioinformaticians and plant biologists. The Community objective is to develop services supporting the inte ...
Leto: 2025 Vir: Nacionalni inštitut za biologijo (NIB)
Št. zadetkov: 4
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