Št. zadetkov: 23
Prispevek na konferenci brez natisa
Oznake:
odziv krompirja na stres;statistične metode;metode strojnega učenja;Super krompir;projekt ADAPT;Nacionalni inštitut za biologijo;
Kako razumemo kaj se dogaja v rastlinski celici pod stresom – večnivojska integracija podatkov
Leto:
2025
Vir:
Nacionalni inštitut za biologijo (NIB)
Samostojni znanstveni sestavek ali poglavje v monografski publikaciji
Oznake:
de novo sestavljanje transkriptomov;visoko zmogljive tehnologije sekveniranja;pan-transkriptom;FASTQ;rastlinski transkriptom;tetraploidni krompir;RNA-sekvenciranje;
We have witnessed a rapid advancement in high-throughput genome sequencing and the maturation of long-read technologies. However, an accurate assembly of polyploid potato genomes still remains challenging. Sequencing the double-monoploid genome of Solanum tuberosum Group Phureja (Xu et al., Nature 4 ...
Leto:
2021
Vir:
Repozitorij Univerze v Ljubljani (RUL)
Samostojni znanstveni sestavek ali poglavje v monografski publikaciji
Oznake:
rastline;krompir;identifikacija;sekveniranje;izražanje;napoved tarč;analiza malih RNA;
Small RNAs (sRNAs) are short noncoding RNAs involved in the regulation of a wide range of biological processes in plants. Advances in high-throughput sequencing and development of new computational tools had facilitated the discovery of different classes of sRNAs, their quantification, and elucidati ...
Leto:
2021
Vir:
Repozitorij Univerze v Ljubljani (RUL)
Doktorska disertacija
Oznake:
pan-transcriptome;differential networks;multi-omics;time-series;spatial response;multi-way interactions;plant immune signalling;
As sessile organisms, crops interact directly and indirectly with multiple herbivores and pathogens at daily basis, including pests that significantly reduce yields, however, dynamics of crop-pest interactions is relatively poorly understood. One of the world's most important vegetable crops is pota ...
Leto:
2021
Vir:
Biotehniška fakulteta (UL BF)
Video in druga učna gradiva
Oznake:
podatki;ravnanje s podatki;ravnanje z raziskovalnimi podatki;raziskovalni podatki;odprta znanost;
pISA-tree
Leto:
2024
Vir:
Nacionalni inštitut za biologijo (NIB)
Video in druga učna gradiva
Oznake:
podatki;ravnanje s podatki;ravnanje z raziskovalnimi podatki;raziskovalni podatki;odprta znanost;programska orodja;Python;R;
Predstavitev programskih orodij Python in R
Leto:
2024
Vir:
Nacionalni inštitut za biologijo (NIB)
Druge monografije in druga zaključena dela
Oznake:
načrt ravnanja z raziskovalnimi podatki;odprti podatki;podatkovna objava;načela FAIR;odprta znanost;
Predstavitev je predstavila zasnovo in vsebino novega spletnega Priročnika o načrtovanju ravnanja z raziskovalnimi podatki (2025) ter pokazala njegovo praktično uporabo na konkretnih primerih iz naravoslovja in družboslovja.
Leto:
2025
Vir:
Repozitorij Univerze v Ljubljani (RUL)
Izvirni znanstveni članek
Oznake:
biological networks;clustering;gene expression;time series;dynamic network analysis;dynamic data visualisation;web application;multi-conditional datasets;background knowledge;
Background
Progress in high-throughput molecular methods accompanied by more complex experimental designs demands novel data visualisation solutions. To specifically answer the question which parts of the specifical biological system are responding in particular perturbation, integrative approach i ...
Leto:
2018
Vir:
Nacionalni inštitut za biologijo (NIB)
Izvirni znanstveni članek
Oznake:
Rotavirus;Norovirus;faecal coliforms;RT-qPCR;methacrylate monolithic columns;enteric virus concentration;
This is the first surveillance study using methacrylate monolithic supports to concentrate environmental coastal water samples, prior to molecular target detection by RT-qPCR. Rotaviruses (RoV) and Noroviruses (NoV) were monitored in a polluted area at the Bay of Koper (Gulf of Trieste, Northern Adr ...
Leto:
2018
Vir:
Nacionalni inštitut za biologijo (NIB)
Izvirni znanstveni članek
Oznake:
pISA-tree;ISA model;data management;research data;metadata;
We developed pISA-tree, a straightforward and flexible data management solution for organisation of life science project-associated research data and metadata. pISA-tree was initiated by end-user requirements thus its strong points are practicality and low maintenance cost. It enables on-the-fly cre ...
Leto:
2022
Vir:
Nacionalni inštitut za biologijo (NIB)